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Gallery of Examples
===================

.. contents:: **Contents**
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    :depth: 1

.. _general_examples:


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Template creation
-----------------




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    <div class="sphx-glr-thumbcontainer" tooltip="Here we show how to create a template from multiple anatomical scans and register all of them t...">

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    .. figure:: /auto_examples/01_template/images/thumb/sphx_glr_plot_register_thumb.png

        :ref:`sphx_glr_auto_examples_01_template_plot_register.py`

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   /auto_examples/01_template/plot_register
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fMRI spatial preprocessing
--------------------------
Including slice timing, motion correction, bias correction and registration.



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    <div class="sphx-glr-thumbcontainer" tooltip="Standard functional preprocessing and registration of functional image to the anatomical. ">

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    .. figure:: /auto_examples/02_preprocessing/images/thumb/sphx_glr_plot_fmri_coregistration_thumb.png

        :ref:`sphx_glr_auto_examples_02_preprocessing_plot_fmri_coregistration.py`

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   /auto_examples/02_preprocessing/plot_fmri_coregistration
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Functional connectivity
-----------------------

ROI-to-ROI matrices, ROI-to-voxel maps and ICA.



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    <div class="sphx-glr-thumbcontainer" tooltip="Here we show how to regress out confound signals, in particular using  statistical CompCor.">

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    .. figure:: /auto_examples/03_connectivity/images/thumb/sphx_glr_plot_confounds_thumb.png

        :ref:`sphx_glr_auto_examples_03_connectivity_plot_confounds.py`

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   /auto_examples/03_connectivity/plot_confounds

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    .. figure:: /auto_examples/03_connectivity/images/thumb/sphx_glr_plot_ica_thumb.png

        :ref:`sphx_glr_auto_examples_03_connectivity_plot_ica.py`

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   /auto_examples/03_connectivity/plot_ica
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.. container:: sphx-glr-footer


  .. container:: sphx-glr-download

    :download:`Download all examples in Python source code: auto_examples_python.zip <//home/salma/CODE/sammba-mri/doc/auto_examples/auto_examples_python.zip>`



  .. container:: sphx-glr-download

    :download:`Download all examples in Jupyter notebooks: auto_examples_jupyter.zip <//home/salma/CODE/sammba-mri/doc/auto_examples/auto_examples_jupyter.zip>`

.. rst-class:: sphx-glr-signature

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