2. Data conversion¶

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Data conversion: from DICOM (Bruker-Dicom) to NIfTI-1 format

2.1. Data conversion: from DICOM (Bruker-Dicom) to NIfTI-1 format ¶

Sammba-MRI allows to convert Bruker Paravision enhanced multiframe DICOM files to the standard NIfTI-1 format. Extensive information such as date is also extracted. Depends on the number of file to be converted, two options are available:

To convert a single file, we use

io_conversions.dcm_to_nii('/usr/bin/dcmdump', Dicom_input, Saved_Nifti_dir)

To convert several files, we use

io_conversions.recursive_dcm_to_nii('/usr/bin/dcmdump', session_dir, Saved_Nifti_dir)