• Template creation
  • fMRI preprocessing
  • Datasets

Sammba-MRI:

Small mammals NeuroImaging in Python

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Table of Contents

  • 6. Gallery of Examples
    • 6.1. Template creation
    • 6.2. fMRI spatial preprocessing
    • 6.3. Functional connectivity

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5.6.1. segmentation.interfaces

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6.1.1. Registration to common space

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6. Gallery of Examples¶

Contents

  • Template creation

  • fMRI spatial preprocessing

  • Functional connectivity

6.1. Template creation¶

../_images/sphx_glr_plot_register_thumb.png

Registration to common space¶

6.2. fMRI spatial preprocessing¶

Including slice timing, motion correction, bias correction and registration.

../_images/sphx_glr_plot_fmri_coregistration_thumb.png

Functional and anatomical coregistration¶

6.3. Functional connectivity¶

ROI-to-ROI matrices, ROI-to-voxel maps and ICA.

../_images/sphx_glr_plot_confounds_thumb.png

Confounds exploration¶

../_images/sphx_glr_plot_ica_thumb.png

ICA on mouse¶

Download all examples in Python source code: auto_examples_python.zip

Download all examples in Jupyter notebooks: auto_examples_jupyter.zip

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